BioMCP is a server implementation that provides structured access to key biomedical databases through a unified interface. Developed by GenomOncology, it connects to ClinicalTrials.gov, PubMed (via PubTator3), and MyVariant.info to enable searching and retrieving information about clinical trials, research articles, and genetic variants. The server exposes these capabilities as MCP tools that can be used by AI assistants to access up-to-date biomedical data, overcoming knowledge cutoff limitations. BioMCP handles entity normalization, intelligent rendering of complex data as Markdown, and transparent attribution of sources, making it valuable for biomedical research, clinical decision support, and literature review workflows.
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Check all API connectivity.
Show all entities and commands.
Show gene-specific filters and examples.
Get focused detail for a gene by its ID.
Get focused detail for a variant by its ID.
Search for articles related to a specific gene.
Search for clinical trials related to a specific condition.
Get focused detail for a drug by its ID.
Get focused detail for a disease by its ID.
Get focused detail for a pathway by its ID.
Get focused detail for a protein by its ID.
Search for adverse events related to a drug.
Get pharmacogenomic recommendations for a gene.
Search for GWAS traits.
Search for phenotypes.
Perform gene-set enrichment analysis.
Start a shared HTTP server for multiple workers.
List all guided investigation workflows.
Show details for a specific skill.
Show version and build info.
Self-update to the latest release.
Remove biomcp from the local binary path.
