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BioMCP (Biomedical Database Integration)

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Summary

BioMCP is a server implementation that provides structured access to key biomedical databases through a unified interface. Developed by GenomOncology, it connects to ClinicalTrials.gov, PubMed (via PubTator3), and MyVariant.info to enable searching and retrieving information about clinical trials, research articles, and genetic variants. The server exposes these capabilities as MCP tools that can be used by AI assistants to access up-to-date biomedical data, overcoming knowledge cutoff limitations. BioMCP handles entity normalization, intelligent rendering of complex data as Markdown, and transparent attribution of sources, making it valuable for biomedical research, clinical decision support, and literature review workflows.

Available Actions(9)

article_searcher

Search for articles by genes, diseases, variants, or keywords.

article_details

Get detailed article information including abstracts and full text.

trial_searcher

Advanced trial search with filtering by condition, intervention, phase, etc.

trial_protocol

Get detailed trial protocol information.

trial_locations

Retrieve trial site locations and contact information.

trial_outcomes

Access results and outcome measures of clinical trials.

trial_references

Find related publications for clinical trials.

variant_searcher

Search for genetic variants with sophisticated filtering.

variant_details

Get comprehensive annotations from multiple sources (CIViC, ClinVar, COSMIC, dbSNP, etc.).

Last Updated: June 13, 2025

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