BioMCP (Biomedical Database Integration)
Summary
BioMCP is a server implementation that provides structured access to key biomedical databases through a unified interface. Developed by GenomOncology, it connects to ClinicalTrials.gov, PubMed (via PubTator3), and MyVariant.info to enable searching and retrieving information about clinical trials, research articles, and genetic variants. The server exposes these capabilities as MCP tools that can be used by AI assistants to access up-to-date biomedical data, overcoming knowledge cutoff limitations. BioMCP handles entity normalization, intelligent rendering of complex data as Markdown, and transparent attribution of sources, making it valuable for biomedical research, clinical decision support, and literature review workflows.
Available Actions(9)
article_searcher
Search for articles by genes, diseases, variants, or keywords.
article_details
Get detailed article information including abstracts and full text.
trial_searcher
Advanced trial search with filtering by condition, intervention, phase, etc.
trial_protocol
Get detailed trial protocol information.
trial_locations
Retrieve trial site locations and contact information.
trial_outcomes
Get results and outcome measures of clinical trials.
trial_references
Access related publications for clinical trials.
variant_searcher
Search for genetic variants with sophisticated filtering.
variant_details
Obtain comprehensive annotations from multiple sources (CIViC, ClinVar, COSMIC, dbSNP, etc.).
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