BioMCP is a server implementation that provides structured access to key biomedical databases through a unified interface. Developed by GenomOncology, it connects to ClinicalTrials.gov, PubMed (via PubTator3), and MyVariant.info to enable searching and retrieving information about clinical trials, research articles, and genetic variants. The server exposes these capabilities as MCP tools that can be used by AI assistants to access up-to-date biomedical data, overcoming knowledge cutoff limitations. BioMCP handles entity normalization, intelligent rendering of complex data as Markdown, and transparent attribution of sources, making it valuable for biomedical research, clinical decision support, and literature review workflows.
No reviews yet. Be the first to review!
Sign in to join the conversation
Highlight AIFans out across PubTator3 and Europe PMC, deduplicates PMID/PMCID/DOI identifiers, and can add a Semantic Scholar leg when your filters support it.
Routes a biomedical question to a shipped worked example and two starter commands. Parameters: question (string).
Covers local query, cohort, survival, compare, and co-occurrence workflows with native terminal, SVG, and PNG charts for downloaded cBioPortal-style datasets.
Turns one known paper into a broader evidence map by retrieving its citations.
Turns one known paper into a broader evidence map by retrieving its references.
Turns one known paper into a broader evidence map by retrieving recommendations related to the paper.
Retrieves entities associated with a specific article.
Performs top-level g:Profiler enrichment for a set of genes. Parameters: genes (string).
Allows up to 10 focused get calls in one command.
Retrieves detailed information about a specific gene. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific variant. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific article. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific drug. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific disease. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific pathway. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific protein. Parameters: id (string), sections (optional string).
Retrieves detailed information about a specific trial. Parameters: id (string), sections (optional string).
